Center
Center contains a list of datasets used to train an AI agent to find the center of rotation of tomographic data sets.
tomocupy was run using the default parameters selected by user (see table below) with the –reconstruction-type set to try. A second try reconstruction was run without user selected parameters.
ai_00001
Static (bone) sample with strong absorption.
For example:
$ tomocupy recon_steps --file-name /data/2022-07/Stock/WKH_1490U_1_050.h5 --rotation-axis 1214.5 --reconstruction-type try --remove-stripe-method fw --dezinger 3
$ tomocupy recon --file-name /data/2022-07/Stock/WKH_1490U_1_050.h5 --rotation-axis 1214.5 --reconstruction-type try
The data are available at ai_00001
Sample |
rotation-axis |
Recon command |
|---|---|---|
SpFn_T2_288_4_rman_001 |
1244 |
tomocupy recon –file-name /data/2022-07/Stock/SpFn_T2_288_4_rman_001.h5 –rotation-axis 1244 –reconstruction-type try –remove-stripe-method fw |
SpFn_T2_288_4_rman_take_2_002 |
1241.0 |
tomocupy recon –file-name /data/2022-07/Stock/SpFn_T2_288_4_rman_take_2_002.h5 –rotation-axis 1241.0 –reconstruction-type try –remove-stripe-method fw |
e6398_003 |
1212.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6398_003.h5 –rotation-axis 1212.50 –reconstruction-type try –remove-stripe-method fw |
e6398_004 |
1221.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6398_004.h5 –rotation-axis 1221.0 –reconstruction-type try –remove-stripe-method fw |
e6398_005 |
1224.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6398_005.h5 –rotation-axis 1224.50 –reconstruction-type try –remove-stripe-method fw |
e6401_006 |
1212.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6401_006.h5 –rotation-axis 1212.50 –reconstruction-type try –remove-stripe-method fw |
e6401_007 |
1221.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6401_007.h5 –rotation-axis 1221.0 –reconstruction-type try –remove-stripe-method fw |
e6401_008 |
1224.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6401_008.h5 –rotation-axis 1224.0 –reconstruction-type try –remove-stripe-method fw |
e6402_009 |
1212.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6402_009.h5 –rotation-axis 1212.0 –reconstruction-type try –remove-stripe-method fw |
e6402_010 |
1220.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6402_010.h5 –rotation-axis 1220.0 –reconstruction-type try –remove-stripe-method fw |
e6402_011 |
1224.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e6402_011.h5 –rotation-axis 1224.0 –reconstruction-type try –remove-stripe-method fw |
f2010_012 |
1214.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2010_012.h5 –rotation-axis 1214.0 –reconstruction-type try –remove-stripe-method fw |
f2010_013 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2010_013.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
f2010_014 |
1224.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2010_014.h5 –rotation-axis 1224.50 –reconstruction-type try –remove-stripe-method fw |
e5727_015 |
1214.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5727_015.h5 –rotation-axis 1214.5 –reconstruction-type try –remove-stripe-method fw |
e5727_016 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5727_016.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
e5727_017 |
1226.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5727_017.h5 –rotation-axis 1226.0 –reconstruction-type try –remove-stripe-method fw |
f2011_018 |
1217.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2011_018.h5 –rotation-axis 1217.50 –reconstruction-type try –remove-stripe-method fw |
f2011_019 |
1223.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2011_019.h5 –rotation-axis 1223.50 –reconstruction-type try –remove-stripe-method fw |
f2011_020 |
1226.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2011_020.h5 –rotation-axis 1226.0 –reconstruction-type try –remove-stripe-method fw |
e5729_021 |
1211.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5729_021.h5 –rotation-axis 1211.0 –reconstruction-type try –remove-stripe-method fw |
e5729_022 |
1220.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5729_022.h5 –rotation-axis 1220.0 –reconstruction-type try –remove-stripe-method fw |
e5729_023 |
1223.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e5729_023.h5 –rotation-axis 1223.0 –reconstruction-type try –remove-stripe-method fw |
f2012_024 |
1214.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2012_024.h5 –rotation-axis 1214.0 –reconstruction-type try –remove-stripe-method fw |
f2012_025 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2012_025.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
f2012_026 |
1224.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/f2012_026.h5 –rotation-axis 1224.50 –reconstruction-type try –remove-stripe-method fw |
e8193_027 |
1212.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8193_027.h5 –rotation-axis 1212.0 –reconstruction-type try –remove-stripe-method fw |
e8193_028 |
1220.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8193_028.h5 –rotation-axis 1220.5 –reconstruction-type try –remove-stripe-method fw |
e8193_029 |
1224.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8193_029.h5 –rotation-axis 1224.5 –reconstruction-type try –remove-stripe-method fw |
WT106F01_030 |
1214.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WT106F01_030.h5 –rotation-axis 1214.5 –reconstruction-type try –remove-stripe-method fw |
WT106F01_031 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WT106F01_031.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
WT106F01_032 |
1224.50 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WT106F01_032.h5 –rotation-axis 1224.50 –reconstruction-type try –remove-stripe-method fw |
e8191_033 |
1213.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8191_033.h5 –rotation-axis 1213.0 –reconstruction-type try –remove-stripe-method fw |
e8191_034 |
1221.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8191_034.h5 –rotation-axis 1221.0 –reconstruction-type try –remove-stripe-method fw |
e8191_035 |
1224.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e8191_035.h5 –rotation-axis 1224.5 –reconstruction-type try –remove-stripe-method fw |
e4865_036 |
1213.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4865_036.h5 –rotation-axis 1213.0 –reconstruction-type try –remove-stripe-method fw |
e4865_037 |
1220.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4865_037.h5 –rotation-axis 1220.0 –reconstruction-type try –remove-stripe-method fw |
e4865_038 |
1223.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4865_038.h5 –rotation-axis 1223.5 –reconstruction-type try –remove-stripe-method fw |
e4792_039 |
1212.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4792_039.h5 –rotation-axis 1212.0 –reconstruction-type try –remove-stripe-method fw |
e4792_040 |
1221.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4792_040.h5 –rotation-axis 1221.5 –reconstruction-type try –remove-stripe-method fw |
e4792_041 |
1224.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4792_041.h5 –rotation-axis 1224.0 –reconstruction-type try –remove-stripe-method fw |
e4793_042 |
1214.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4793_042.h5 –rotation-axis 1214.5 –reconstruction-type try –remove-stripe-method fw |
e4793_043 |
1222.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/e4793_043.h5 –rotation-axis 1222.5 –reconstruction-type try –remove-stripe-method fw |
WT106F02_046 |
1222.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WT106F02_046.h5 –rotation-axis 1222.5 –reconstruction-type try –remove-stripe-method fw |
WKH_1490U_1_048 |
1227.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1490U_1_048.h5 –rotation-axis 1227.5 –reconstruction-type try –remove-stripe-method fw |
WKH_1490U_1_049 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1490U_1_049.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1490U_1_050 |
1214.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1490U_1_050.h5 –rotation-axis 1214.5 –reconstruction-type try –remove-stripe-method fw –dezinger 3 |
WKH_1504L_1_060 |
1222.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_060.h5 –rotation-axis 1222.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1504L_1_061 |
1216.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_061.h5 –rotation-axis 1216.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1504L_1_062 |
1213.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_062.h5 –rotation-axis 1213.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1504L_1_063 |
1206.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_063.h5 –rotation-axis 1206.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1504L_1_065 |
1195.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_065.h5 –rotation-axis 1195.0 –reconstruction-type try –remove-stripe-method fw |
WKH_1504L_1_070 |
1219.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/WKH_1504L_1_070.h5 –rotation-axis 1219.0 –reconstruction-type try –remove-stripe-method fw |
romie_tibia_22U_L_071 |
1241.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/romie_tibia_22U_L_071.h5 –rotation-axis 1241.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_073 |
1184.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_073.h5 –rotation-axis 1184.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_074 |
1187.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_074.h5 –rotation-axis 1187.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_075 |
1203.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_075.h5 –rotation-axis 1203.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_076 |
1207.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_076.h5 –rotation-axis 1207.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_077 |
1213.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_077.h5 –rotation-axis 1213.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_078 |
1226.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_078.h5 –rotation-axis 1226.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_079 |
1228.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_079.h5 –rotation-axis 1228.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_080 |
1236.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_080.h5 –rotation-axis 1236.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_081 |
1246.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_081.h5 –rotation-axis 1246.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_082 |
1231.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_082.h5 –rotation-axis 1231.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_083 |
1234.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_083.h5 –rotation-axis 1234.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_084 |
1240.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_084.h5 –rotation-axis 1240.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_085 |
1252.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_085.h5 –rotation-axis 1252.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_086 |
1260.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_086.h5 –rotation-axis 1260.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_087 |
1271.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_087.h5 –rotation-axis 1271.5 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_088 |
1271.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_088.h5 –rotation-axis 1271.0 –reconstruction-type try –remove-stripe-method fw |
thresher_T3_089 |
1288.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/thresher_T3_089.h5 –rotation-axis 1288.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_090 |
1209.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_090.h5 –rotation-axis 1209.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_091 |
1224.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_091.h5 –rotation-axis 1224.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_092 |
1235.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_092.h5 –rotation-axis 1235.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_093 |
1233.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_093.h5 –rotation-axis 1233.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_094 |
1244.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_094.h5 –rotation-axis 1244.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_095 |
1248.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_095.h5 –rotation-axis 1248.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_096 |
1258.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_096.h5 –rotation-axis 1258.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_097 |
1272.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_097.h5 –rotation-axis 1272.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_098 |
1274.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_098.h5 –rotation-axis 1274.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_099 |
1203.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_099.h5 –rotation-axis 1203.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_100 |
1220.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_100.h5 –rotation-axis 1220.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_101 |
1227.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_101.h5 –rotation-axis 1227.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_102 |
1229.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_102.h5 –rotation-axis 1229.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_103 |
1227.5 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_103.h5 –rotation-axis 1227.5 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_104 |
1246.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_104.h5 –rotation-axis 1246.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_105 |
1255.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_105.h5 –rotation-axis 1255.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_106 |
1270.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_106.h5 –rotation-axis 1270.0 –reconstruction-type try –remove-stripe-method fw |
D365_42_44_delta2_107 |
1272.0 |
tomocupy recon_steps –file-name /data/2022-07/Stock/D365_42_44_delta2_107.h5 –rotation-axis 1272.0 –reconstruction-type try –remove-stripe-method fw |
ai_00002
Dynamic (wood) sample with water.
For example:
$ tomocupy recon --file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_003.h5 --rotation-axis 1948 --reconstruction-type try
The data are available at ai_00002
Sample |
Tomolog |
rotation-axis |
Recon command |
|---|---|---|---|
E119_3_GR_01_003 |
|
1948 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_003.h5 –rotation-axis 1948 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_GR_01_003_rec/default/try_center |
E119_3_GR_01_004 |
|
1948.5 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_004.h5 –rotation-axis 1948.5 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_GR_01_004_rec/default/try_center |
E119_3_GR_01_005 |
|
1947.5 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_005.h5 –rotation-axis 1947.5 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_GR_01_005_rec/default/try_center |
E119_3_GR_01_006 |
|
1947.5 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_006.h5 –rotation-axis 1947.5 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_GR_01_006_rec/default/try_center |
E119_3_GR_01_007 |
|
1945 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_GR_01_007.h5 –rotation-axis 1945 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_GR_01_007_rec/default/try_center |
E119_3_LW_008 |
1625.17 |
tomocupy recon_steps –file-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/E119_3_LW_008.h5 –rotation-axis 1625.17 –reconstruction-type try –out-path-name /gdata/dm/2BM/2023-02/Jakes-2023-02/data/Jakes_rec/E119_3_LW_008_rec/default/try_center |
