Credits¶
Citations¶
Cite [A1] if you use TomoBank
Cite [A2] if using Data Exchange
Cite [A3] if using tomoPy
- A1
Francesco De Carlo, Doğa Gürsoy, Daniel J Ching, K Joost Batenburg, Wolfgang Ludwig, Lucia Mancini, Federica Marone, Rajmund Mokso, Daniël M Pelt, Jan Sijbers, and Mark Rivers. Tomobank: a tomographic data repository for computational x-ray science. Measurement Science and Technology, 29(3):034004, 2018. URL: http://stacks.iop.org/0957-0233/29/i=3/a=034004.
- A2
Francesco De Carlo, Doǧa Gürsoy, Federica Marone, Mark Rivers, Dilworth Y. Parkinson, Faisal Khan, Nicholas Schwarz, David J. Vine, Stefan Vogt, Sophie-Charlotte Gleber, Suresh Narayanan, Matt Newville, Tony Lanzirotti, Yue Sun, Young Pyo Hong, and Chris Jacobsen. Scientific data exchange: a schema for HDF5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, Nov 2014. URL: https://doi.org/10.1107/S160057751401604X, doi:10.1107/S160057751401604X.
- A3
Doǧa Gürsoy, Francesco De Carlo, Xianghui Xiao, and Chris Jacobsen. TomoPy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, Sep 2014. URL: https://doi.org/10.1107/S1600577514013939, doi:10.1107/S1600577514013939.
References¶
- B1
William E. Allcock, Benjamin S. Allen, Rachana Ananthakrishnan, Ben Blaiszik, Kyle Chard, Ryan Chard, Ian Foster, Lukasz Lacinski, Michael E. Papka, and Rick Wagner. Petrel: a programmatically accessible research data service. In Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (Learning), PEARC ’19. New York, NY, USA, 2019. Association for Computing Machinery. URL: https://doi.org/10.1145/3332186.3332241, doi:10.1145/3332186.3332241.
- B2
F. Brun, G. Turco, S. Paoletti, and A. Accardo. World Congress on Medical Physics and Biomedical Engineering, June 7-12, 2015, Toronto, Canada, chapter A synchrotron radiation microtomography study of wettability and swelling of nanocomposite Alginate/Hydroxyapatite scaffolds for bone tissue engineering, pages 288–291. Springer International Publishing, Cham, 2015. URL: http://dx.doi.org/10.1007/978-3-319-19387-8_70.
- B3
Marcel Burger, Alexander Gundlach-Graham, Steffen Allner, Gunnar Schwarz, Hao A. O. Wang, Luzia Gyr, Simon Burgener, Bodo Hattendorf, Daniel Grolimund, and Detlef Günther. High-speed, high-resolution, multielemental la-icp-tofms imaging: part ii. critical evaluation of quantitative three-dimensional imaging of major, minor, and trace elements in geological samples. Analytical Chemistry, 87(16):8259–8267, 2015. PMID: 26185891. URL: http://dx.doi.org/10.1021/acs.analchem.5b01977, arXiv:http://dx.doi.org/10.1021/acs.analchem.5b01977, doi:10.1021/acs.analchem.5b01977.
- B4
Minna Bührer, Marco Stampanoni, Xavier Rochet, Felix Büchi, Jens Eller, and Federica Marone. High-numerical-aperture macroscope optics for time-resolved experiments. Journal of Synchrotron Radiation, 26(4):1161–1172, Jul 2019. URL: https://doi.org/10.1107/S1600577519004119, doi:10.1107/S1600577519004119.
- B5
S. Singh; T. J. Stannard; S. S. Singh; A. S. S. Singaravelu; X. Xiao; N. Chawla. Varied volume fractions of borosilicate glass spheres with diameter gaussian distributed from 38-45 micronsen cased in a polypropylene matrix. TBD, 00(3):00–00, June 2016.
- B6
T. J. Stannard; J. J. Williams; S. S. Singh; A. S. S. Singaravelu; X. Xiao; N. Chawla. Synchrotron x-ray tomography for three-dimensional time-resolved observations of fatigue crack initiation and growth from corrosion pits in peak-aged al7075 alloy. TBD, 00(0):00–00, June 2017.
- B7
Daniel J. Ching and Doǧa Gürsoy. \it XDesign: an open-source software package for designing X-ray imaging phantoms and experiments. Journal of Synchrotron Radiation, 24(2):537–544, Mar 2017. URL: https://doi.org/10.1107/S1600577517001928, doi:10.1107/S1600577517001928.
- B8
P. Cloetens, W. Ludwig, J. Baruchel, D. Van Dyck, J. Van Landuyt, J. P. Guigay, and M. Schlenker. Holotomography: quantitative phase tomography with micrometer resolution using hard synchrotron radiation x rays. Applied Physics Letters, 75(19):2912–2914, 1999. URL: http://dx.doi.org/10.1063/1.125225, arXiv:http://dx.doi.org/10.1063/1.125225, doi:10.1063/1.125225.
- B9
Gürsoy D, De Carlo F, Xiao X, and Jacobsen C. Tomopy: a framework for the analysis of synchrotron tomographic data. Journal of Synchrotron Radiation, 21(5):1188–1193, 2014.
- B10
Pelt D, Gürsoy D, Palenstijn WJ, Sijbers J, De Carlo F, and Batenburg KJ. Integration of tomopy and the astra toolbox for advanced processing and reconstruction of tomographic synchrotron data. Journal of Synchrotron Radiation, 23(3):842–849, 2016.
- B11
DOI. The digital object identifier. 2016. URL: http://dx.doi.org/ (visited on 2016-11-19).
- B12
Betsy A Dowd, Graham H. Campbell, Robert B.Marr, Vivek V. Nagarkar, Sameer V. Tipnis, Lisa Axe, and D. P. Siddons. Developments in synchrotron x-ray computed microtomography at the national synchrotron light source. In Developments in X-Ray Tomography II, volume 3772, 224–236. 1999. doi:10.1117/12.363725.
- B13
Diego Dreossi, Lucia Mancini, Geert Van Eyndhoven, Vincent Van Nieuwenhove, and Jan Sijbers. The trabecular bone data set. 2015.
- B14
DXchange. The data exchange toolbox. 2016. URL: http://dxchange.readthedocs.io/en/latest/source/demo.html (visited on 2016-11-19).
- B15
ESRF. The edf file format. 2016. URL: http://www.esrf.eu/Instrumentation/software/data-analysis/OurSoftware/SAXS/SaxsHeader (visited on 2016-11-19).
- B16
De Carlo F, Gursoy D, Marone F, Rivers M, Parkinson YD, Khan F, Schwarz N, Vine DJ, Vogt S, Gleber SC, Narayanan S, Newville M, Lanzirotti T, Sun Y, Hong YP, and Jacobsen C. Scientific data exchange: a schema for hdf5-based storage of raw and analyzed data. Journal of Synchrotron Radiation, 21(6):1224–1230, 2014.
- B17
Globus. Globus. 2016. URL: https://www.globus.org/ (visited on 2016-11-19).
- B18
Jean Pierre Guigay, Max Langer, Renaud Boistel, and Peter Cloetens. Mixed transfer function and transport of intensity approach for phase retrieval in the fresnel region. Opt. Lett., 32(12):1617–1619, Jun 2007. URL: http://ol.osa.org/abstract.cfm?URI=ol-32-12-1617, doi:10.1364/OL.32.001617.
- B19
Alexander Gundlach-Graham, Marcel Burger, Steffen Allner, Gunnar Schwarz, Hao A. O. Wang, Luzia Gyr, Daniel Grolimund, Bodo Hattendorf, and Detlef Günther. High-speed, high-resolution, multielemental laser ablation-inductively coupled plasma-time-of-flight mass spectrometry imaging: part i. instrumentation and two-dimensional imaging of geological samples. Analytical Chemistry, 87(16):8250–8258, 2015. PMID: 26122331. URL: http://dx.doi.org/10.1021/acs.analchem.5b01196, arXiv:http://dx.doi.org/10.1021/acs.analchem.5b01196, doi:10.1021/acs.analchem.5b01196.
- B20
Waruntorn Kanitpanyacharoen, Dilworth Y. Parkinson, Francesco De Carlo, Federica Marone, Marco Stampanoni, Rajmund Mokso, Alastair MacDowell, and Hans-Rudolf Wenk. A comparative study of X-ray tomographic microscopy on shales at different synchrotron facilities: ALS, APS and SLS. Journal of Synchrotron Radiation, 20(1):172–180, Jan 2013. URL: https://doi.org/10.1107/S0909049512044354, doi:10.1107/S0909049512044354.
- B21
Waruntorn Kanitpanyacharoen, Dilworth Y. Parkinson, Francesco De Carlo, Federica Marone, Marco Stampanoni, Rajmund Mokso, Alastair MacDowell, and Hans-Rudolf Wenk. The round-robin data set. 2017. doi:10.17038/XSD/1344306.
- B22
Daniil Kazantsev, Valery Pickalov, Srikanth Nagella, Edoardo Pasca, and Philip J Withers. Tomophantom, a software package to generate 2d–4d analytical phantoms for ct image reconstruction algorithm benchmarks. SoftwareX, 7:150–155, 2018.
- B23
Alexander Kostenko, K. Joost Batenburg, Andrew King, S. Erik Offerman, and Lucas J. van Vliet. Total variation minimization approach in in-line x-ray phase-contrast tomography. Opt. Express, 21(10):12185–12196, May 2013. URL: http://www.opticsexpress.org/abstract.cfm?URI=oe-21-10-12185, doi:10.1364/OE.21.012185.
- B24
Larsson. From kitchen tomography to a cutting edge neutron imaging beamline. 2022. URL: https://www.linxs.se/news/2021/10/11/from-kitchen-tomography-to-a-cutting-edge-neutron-imaging-beamlinenbsp (visited on 2022-12-07).
- B25
Emanuel Larsson, Doğa Gürsoy, and Stephen A. Hall. Kitchen-based light tomography - a diy toolkit for advancing tomography - by and for the tomography community. Tomography of Materials and Structures, pages 100001, 2022. URL: https://www.sciencedirect.com/science/article/pii/S2949673X22000018, doi:https://doi.org/10.1016/j.tmater.2022.100001.
- B26
Emanuel Larsson, Malte Storm, Fabian Wilde, Markus Ziehmer, Kaixiong Hu, Doga Gursoy, Francesco De Carlo, Erica Lilleoddena, Martin Müller, and Imke Grevinga. A novel 3d test pattern for full-field transmission x-ray microscopy – nanoporous gold. Journal of Synchrotron Radiation, xx(x):xxxx–xxxx, 2018.
- B27
Emanuel Larsson, Malte Storm, Fabian Wilde, Markus Ziehmer, Kaixiong Hu, Doga Gursoy, Francesco De Carlo, Erica Lilleoddena, Martin Müller, and Imke Grevinga. The nanoporous gold data set. 2018. doi:10.17038/XSD/1454422.
- B28
Yijin Liu, Florian Meirer, Phillip A. Williams, Junyue Wang, Joy C. Andrews, and Piero Pianetta. Txm-wizard: a program for advanced data collection and evaluation in full-field transmission x-ray microscopy. Journal of Synchrotron Radiation, 19(2):281–287, Mar 2012. URL: https://doi.org/10.1107/S0909049511049144, doi:10.1107/S0909049511049144.
- B29
Yijin Liu, Florian Meirer, Phillip A. Williams, Junyue Wang, Joy C. Andrews, and Piero Pianetta. \it TXM-Wizard: a program for advanced data collection and evaluation in full-field transmission X-ray microscopy. Journal of Synchrotron Radiation, 19(2):281–287, Mar 2012. URL: https://doi.org/10.1107/S0909049511049144, doi:10.1107/S0909049511049144.
- B30
Lorentz. Advanced x-ray tomography: experiment, modeling, and algorithms. 2014. URL: https://www.lorentzcenter.nl/lc/web/2014/614/info.php3?wsid=614 (visited on 2016-11-19).
- B31
Lorentz. Artefacts in x-ray tomography. 2015. URL: https://www.lorentzcenter.nl/lc/web/2015/689/info.php3?wsid=689 (visited on 2016-11-19).
- B32
Lorentz. Quantitative 3d x-ray imaging: from tomographic images to metrics. 2016. URL: https://www.lorentzcenter.nl/lc/web/2016/781/info.php3?wsid=781 (visited on 2016-11-19).
- B33
Eric Maire, Paul Merle, Gilles Peix, Jose Baruchel, and Jean-Yves Buffier. X-ray tomography in material science. Hermes science publications, France, 2000.
- B34
Rajmund Mokso, Christian M. Schlepuetz, Gerd Theidel, Heiner Billich, Elmar Schmid, Tine Celcer, Gordan Mikuljan, Leonardo Sala, Federica Marone, Nick Schlumpf, and Marco Stampanoni. Gigafrost: the gigabit fast readout system for tomography. Journal of Synchrotron Radiation, 24(6):1250–1259, 2017. doi:{10.1107/S1600577517013522}.
- B35
Viktor Nikitin, Gregg Wildenberg, Alberto Mittone, Pavel Shevchenko, Alex Deriy, and Francesco De Carlo. Laminography as a tool for imaging large-size samples with high resolution. 2024. arXiv:2401.11101.
- B36
D. Paganin, S. C. Mayo, T. E. Gureyev, P. R. Miller, and S. W. Wilkins. Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object. Journal of Microscopy, 206(1):33–40, 2002. URL: http://dx.doi.org/10.1046/j.1365-2818.2002.01010.x, doi:10.1046/j.1365-2818.2002.01010.x.
- B37
Christophe Raufaste, Benjamin Dollet, Kevin Mader, Stephane Santucci, and Rajmund Mokso. Three-dimensional foam flow resolved by fast X-ray tomographic microscopy. EPL, 111:38004, 2015.
- B38
L. A. Shepp and B. F. Logan. The fourier reconstruction of a head section. IEEE Transactions on Nuclear Science, 21(3):21–43, June 1974. doi:10.1109/TNS.1974.6499235.
- B39
Somya Singh, Tyler Stannard, Sudhanshu Singh, Arun Singaravelu, Xianghui Xiao, and Nikhilesh Chawla. Varied volume fractions of borosilicate glass spheres with diameter gaussian distributed from 38-45 micronsen cased in a polypropylene matrix. 2017. doi:10.17038/XSD/1373576.
- B40
Tyler Stannard, Jason Williams, Sudhanshu Singh, Arun Singaravelu, Xianghui Xiao, and Nikhilesh Chawla. Synchrotron x-ray tomography for three-dimensional time-resolved observations of fatigue crack initiation and growth from corrosion pits in peak-aged al7075 alloy. 2017. doi:10.17038/XSD/1373575.
- B41
Zeliang Su, Vincent De Andrade, Sorina Cretu, Yinghui Yin, Michael J. Wojcik, Alejandro A. Franco, and Arnaud Demortière. X-ray nanocomputed tomography in zernike phase contrast for studying 3d morphology of li–o2 battery electrode. ACS Applied Energy Materials, 3(5):4093–4102, 2020. URL: https://doi.org/10.1021/acsaem.9b02236, arXiv:https://doi.org/10.1021/acsaem.9b02236, doi:10.1021/acsaem.9b02236.
- B42
Songyuan Tang, Tekin Bicer, Tao Sun, Kamel Fezzaa, and Samuel J. Clark. Deep learning-based spatiotemporal fusion for high-fidelity ultra-high-speed x-ray radiography. Journal of Synchrotron Radiation, 2024. To be published.
- B43
tiff. The tiff file format. 2016. URL: https://en.wikipedia.org/wiki/TIFF (visited on 2016-11-19).
- B44
TomoBank. The tomography data bank. 2016. URL: http://www.aps.anl.gov/tomobank (visited on 2016-11-19).
- B45
Ziheng Wu, Debomita Basu, John L. L. Meyer, Elizabeth Larson, Robin Kuo, Jack Beuth, and Anthony Rollett. Study of powder gas entrapment and its effects on porosity in 17-4 ph stainless steel parts fabricated in laser powder bed fusion. JOM, 73(1):177–188, Jan 2021. URL: https://doi.org/10.1007/s11837-020-04491-z, doi:10.1007/s11837-020-04491-z.
- B46
Haiyan Yu, Sihao Xia, Chenxi Wei, Yuwei Mao, Daniel Larsson, Xianghui Xiao, Piero Pianetta, Young-Sang Yu, and Yijin Liu. Automatic projection image registration for nanoscale X-ray tomographic reconstruction. Journal of Synchrotron Radiation, 25(6):1819–1826, Nov 2018. URL: https://doi.org/10.1107/S1600577518013929, doi:10.1107/S1600577518013929.
- B47
V. V. Nikitin, M. Carlsson, F. Andersson, and R. Mokso. Four-dimensional tomographic reconstruction by time domain decomposition. IEEE Transactions on Computational Imaging, 5(3):409–419, Sep. 2019. doi:10.1109/TCI.2019.2898088.